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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15899999_15964960_F

Intron Information:

Intron Rank:
145729
Intron Class:
major
Intron Phase:
Intron Coordinates:
15899999 - 15964960
Intron Length:
64962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AGTGTCCTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
82.7
0.73
0.8
77.1
31.6
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
48.6
-0.2
1.8
54.66
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028530
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032706
15899914 - 15975439
75526