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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_15965073_15975301_F

Intron Information:

Intron Rank:
145730
Intron Class:
major
Intron Phase:
Intron Coordinates:
15965073 - 15975301
Intron Length:
10229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CATTATAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
75.3
0.57
0.8
69.4
36.4
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
45
-0.3
2
58.16
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028530
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032706
15899914 - 15975439
75526