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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16029072_16041252_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16029072 - 16041252
Intron Length:
12181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTATTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
NLGGELIMSALDSVTSLIQA
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
85.3
27.8
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
CTNNA3
Ensembl Gene ID:
ENSAPLG00000004871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005030
16028784 - 16238211
209428