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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16109405_16131483_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16109405 - 16131483
Intron Length:
22079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ACCTATTCAACA
Flanking Amino Acid:
NIRCSVMMIRTPEELEDVSD
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
77
0.61
0.9
69.2
41
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
49.6
-0
1.7
58.61
41.3

Associated Gene:

Gene:
CTNNA3
Ensembl Gene ID:
ENSAPLG00000004871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005030
16028784 - 16238211
209428