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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16131636_16159824_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16131636 - 16159824
Intron Length:
28189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGTAT
U12 Branch Point Sequence:
GCTCACTGAATT
Flanking Amino Acid:
MKNVQYLTKNVIPEFISQVN
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
66.5
0.41
1.4
65.7
43.2
Major PPT
72.9
0.52
1
72.1
38
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
52.5
0.16
1.7
68.49
42

Associated Gene:

Gene:
CTNNA3
Ensembl Gene ID:
ENSAPLG00000004871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005030
16028784 - 16238211
209428