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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16160026_16188451_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16160026 - 16188451
Intron Length:
28426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTAA
5'SS Class:
major
3'SS Sequence:
GTTTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTTGTTTTATTT
Flanking Amino Acid:
TSIDDFLAVSESHILEDVNK
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73.7
33
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
86.9
0.83
0.8
81.4
35.2
Minor 5ss
37.8
-1.4
3.1
49.1
47.1
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
CTNNA3
Ensembl Gene ID:
ENSAPLG00000004871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005030
16028784 - 16238211
209428