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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16233413_16233513_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16233413 - 16233513
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GAAACCAACTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATACCAT
U12 Branch Point Sequence:
ATACCATGAAAC
Flanking Amino Acid:
FREHTSRLVECGISVKNTLM
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
88.1
28.7
Major BPS
56.8
0.17
1.3
66.9
39.3
Major PPT
45.7
-0.2
1.1
39.6
37.8
Minor 5ss
45.1
-0.5
3.1
67
44.3
Minor BPS
47.7
-0.1
1.8
59.68
37.8

Associated Gene:

Gene:
CTNNA3
Ensembl Gene ID:
ENSAPLG00000004871
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037106
16233377 - 16238211
4835