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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16298321_16298640_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16298321 - 16298640
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
MGFNVIRLLSG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.6
0.96
0.7
85.4
34.1
Minor 5ss
56.3
0.21
2.4
67
44.2
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
LRRTM3
Ensembl Gene ID:
ENSAPLG00000005196
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005357
16298317 - 16300178
1862