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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16469331_16480718_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16469331 - 16480718
Intron Length:
11388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTATCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTTTTCTTTACT
Flanking Amino Acid:
VAYLLEHLTVFRRTFEMLRN
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
79
0.65
0.9
73.2
35.7
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
79.9
1.02
1.5
95.83
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017220
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045660
16393064 - 16510512
117449