Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16480886_16490534_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16480886 - 16490534

Intron Length:

9649

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

CTTCATTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TTTGTCTTCATT

Flanking Amino Acid:

HAALADVQKESQALKVSAEA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

35.3

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

85.6

0.8

80.2

31.4

Minor 5ss

39.9

-1.1

3.4

54.7

43.6

Minor BPS

62.5

0.47

1.8

82.74

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017220

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045660

16393064 - 16510512

117449