About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16490728_16495776_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16490728 - 16495776
Intron Length:
5049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
CTTTTAAACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
EKLLEPLIIQVTTLVNCPQN
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.2
0.41
0.9
64
35.9
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017220
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045660
16393064 - 16510512
117449