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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16495884_16506744_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
16495884 - 16506744
Intron Length:
10861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGCTTTGTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
80
0.75
1
78.6
31
Major PPT
65.7
0.35
1
58.2
42.3
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
46.5
-0.1
2.2
67.13
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017220
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045660
16393064 - 16510512
117449