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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16528101_16529771_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16528101 - 16529771
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
PQSSKNPDSPRFSEANYWHL
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
DNAJC12
Ensembl Gene ID:
ENSAPLG00000004592
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048036
16526945 - 16536240
9296
ENSAPLT00000020561
16526945 - 16536240
9296