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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16529968_16531241_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16529968 - 16531241
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTGGTGGT
5'SS Class:
major
3'SS Sequence:
TGCATTTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTTCCTATTT
Flanking Amino Acid:
WEALSNSVKTSMHWAVQNKK
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.3
59.5
45.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.7
0.58
0.8
73.6
36.9
Minor 5ss
29.9
-2.3
3.3
41.9
44.8
Minor BPS
54.2
0.21
1.9
76.98
39.8

Associated Gene:

Gene:
DNAJC12
Ensembl Gene ID:
ENSAPLG00000004592
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048036
16526945 - 16536240
9296
ENSAPLT00000020561
16526945 - 16536240
9296
ENSAPLT00000004724
16528504 - 16536240
7737