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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16531382_16533359_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16531382 - 16533359
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGCAT
U12 Branch Point Sequence:
TTGGCTTTAGCA
Flanking Amino Acid:
PDKHPGNPKAVENFQKLQQA
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
63.3
0.33
1.5
74
41.2
Major PPT
74.4
0.55
1
65.8
45.3
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
60.7
0.33
1.7
70.71
42.1

Associated Gene:

Gene:
DNAJC12
Ensembl Gene ID:
ENSAPLG00000004592
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048036
16526945 - 16536240
9296