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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16533439_16536162_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16533439 - 16536162
Intron Length:
2724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ACATTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTCACTTTAAAT
Flanking Amino Acid:
NLLGCDELSTVEQILAEFKI
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
66.5
0.37
0.9
63.8
37.6
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
62.7
0.48
1.5
73.52
43.4

Associated Gene:

Gene:
DNAJC12
Ensembl Gene ID:
ENSAPLG00000004592
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020561
16526945 - 16536240
9296
ENSAPLT00000004724
16528504 - 16536240
7737
ENSAPLT00000048036
16526945 - 16536240
9296