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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16542865_16544026_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16542865 - 16544026
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGAAGCC
5'SS Class:
major
3'SS Sequence:
TAAATTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
SSDWTPRPRIGPYTFVQQHL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
61.5
38.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.7
0.49
0.9
70
40.7
Minor 5ss
29.7
-2.3
3.6
42
45
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
SIRT1
Ensembl Gene ID:
ENSAPLG00000004304
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004445
16540306 - 16559105
18800
ENSAPLT00000044437
16540306 - 16559105
18800