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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16557762_16558788_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16557762 - 16558788
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
AATTCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACTTCTTAAATT
Flanking Amino Acid:
AKEQISKRLDGTQYLFLPPN
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
77.5
0.62
1
73.8
40.7
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
64.6
0.54
1.6
77.48
40

Associated Gene:

Gene:
SIRT1
Ensembl Gene ID:
ENSAPLG00000004304
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004445
16540306 - 16559105
18800
ENSAPLT00000044437
16540306 - 16559105
18800