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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16567563_16568403_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16567563 - 16568403
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGCTCAC
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ACTGTTTTATTT
Flanking Amino Acid:
PTGGGEGYLPD*
Intron Amino Acid Position:
1020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.3
54.5
44.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82
0.72
1
87
30.8
Minor 5ss
39.1
-1.2
3.2
52.9
44.5
Minor BPS
49.6
0.05
1.6
64.63
41.3

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047094
16567557 - 16600060
32504