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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16568307_16568414_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16568307 - 16568414
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTATCTTC
5'SS Class:
major
3'SS Sequence:
GATCACTATGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TAAAATCTAAGC
Flanking Amino Acid:
LVIQPTGGGEGFSLV*
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
67.2
39.1
Major BPS
71.4
0.53
1
67
39.8
Major PPT
55
0.11
1.2
53.6
40.3
Minor 5ss
44.8
-0.6
2.8
60.1
44.4
Minor BPS
42.2
-0.6
2
51.14
39

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039015
16568042 - 16600060
32019