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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16568499_16569331_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16568499 - 16569331
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTCCCTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAC
U12 Branch Point Sequence:
TTTCCCTTGACA
Flanking Amino Acid:
LPLEKKKQFLLFLTGSDRIP
Intron Amino Acid Position:
909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
60.1
0.25
1.1
68.6
33.3
Major PPT
79.5
0.66
0.9
76.1
32.5
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
83.9
1.06
1
88.57
27.3

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035270
16568042 - 16600132
32091
ENSAPLT00000034780
16568042 - 16600132
32091
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000047094
16567557 - 16600060
32504
ENSAPLT00000039015
16568042 - 16600060
32019