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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16568974_16569331_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16568974 - 16569331
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCATTGCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACATCCTCTACT
Flanking Amino Acid:
LPLEKKKQFLCGIVEL*
Intron Amino Acid Position:
988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
63.3
0.3
0.9
58
37.4
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
55.3
0.25
1.9
71.66
44.6

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002904
16568907 - 16600060
31154