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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16570219_16572528_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16570219 - 16572528
Intron Length:
2310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TTCCTCTCAATA
Flanking Amino Acid:
GADIPVIKQNRQDFVDAYVD
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
69.1
0.48
1
70
32.1
Major PPT
80.7
0.69
0.9
75.6
32.9
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
59.7
0.3
1.5
68.51
38.2

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034780
16568042 - 16600132
32091
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000047094
16567557 - 16600060
32504
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000039015
16568042 - 16600060
32019
ENSAPLT00000035270
16568042 - 16600132
32091