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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16572612_16572846_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16572612 - 16572846
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTGTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTTGTTTTAAAT
Flanking Amino Acid:
IEEAFCLNFTITVENFGTTE
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
81.2
33.5
Major BPS
62
0.3
1
62.3
30.4
Major PPT
72.4
0.5
1
70.7
39.1
Minor 5ss
49
-0.1
2.8
77.2
37.5
Minor BPS
69
0.67
1.5
84.29
36.6

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000039015
16568042 - 16600060
32019
ENSAPLT00000035270
16568042 - 16600132
32091
ENSAPLT00000034780
16568042 - 16600132
32091
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000047094
16567557 - 16600060
32504