About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16575179_16575546_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16575179 - 16575546
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
LQTDAIIQMQMAVDQAHRQN
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.8
78.5
28.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
29.5
-2.3
3.4
40.8
45.7
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000047094
16567557 - 16600060
32504
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000039015
16568042 - 16600060
32019
ENSAPLT00000035270
16568042 - 16600132
32091
ENSAPLT00000034780
16568042 - 16600132
32091