About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16575646_16576096_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16575646 - 16576096
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTCTCATTC
Flanking Amino Acid:
GMDVNHGLSELTDTPVTICT
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.9
0.58
0.8
67.6
38.3
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
53.4
0.08
1.8
67.01
38.9

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000047094
16567557 - 16600060
32504
ENSAPLT00000039015
16568042 - 16600060
32019
ENSAPLT00000035270
16568042 - 16600132
32091