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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16576121_16578628_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16576121 - 16578628
Intron Length:
2508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AATGCTGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTGCTACCT
Flanking Amino Acid:
NWVQQQVFGMDVNHGLSELT
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
100
1.24
0.5
100
0
Major PPT
61.2
0.25
1
54
40.6
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
45
-0.3
2.5
71.62
45.5

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035270
16568042 - 16600132
32091
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000047094
16567557 - 16600060
32504
ENSAPLT00000039015
16568042 - 16600060
32019