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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16580825_16582351_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16580825 - 16582351
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTGTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTTGTTGACA
Flanking Amino Acid:
NLEKAPLKVLENWWSVLEPP
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
72.6
0.51
1.1
68.1
42
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
53.2
0.09
2.1
66.29
40.5

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000039015
16568042 - 16600060
32019
ENSAPLT00000035270
16568042 - 16600132
32091
ENSAPLT00000034780
16568042 - 16600132
32091
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000047094
16567557 - 16600060
32504