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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16583571_16584074_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16583571 - 16584074
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGAACAATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTCTTTCATG
Flanking Amino Acid:
PSGRLPVEIANEIDGTFSSA
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
65.6
0.35
1
60
44.7
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
60.6
0.19
1.8
66.31
42.6

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000047094
16567557 - 16600060
32504
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000039015
16568042 - 16600060
32019
ENSAPLT00000035270
16568042 - 16600132
32091
ENSAPLT00000034780
16568042 - 16600132
32091