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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16584200_16586499_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16584200 - 16586499
Intron Length:
2300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
CTTTACAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTCTTTACAA
Flanking Amino Acid:
QSFAHYFYPQNMVPPDDFRY
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
70.3
0.46
0.9
67.9
37.5
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
67.9
0.56
1.7
80.33
35.6

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035270
16568042 - 16600132
32091
ENSAPLT00000034780
16568042 - 16600132
32091
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000047094
16567557 - 16600060
32504
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000039015
16568042 - 16600060
32019