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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16588282_16590818_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16588282 - 16590818
Intron Length:
2537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATTT
5'SS Class:
major
3'SS Sequence:
TTTATTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATC
Flanking Amino Acid:
GEDHTAALTKEGGVFTFGAG
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
75.1
35.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.2
0.7
0.9
81.3
36.3
Minor 5ss
42.2
-0.9
3.5
64.9
46.4
Minor BPS
68.5
0.56
1.2
72.73
32

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034780
16568042 - 16600132
32091
ENSAPLT00000017785
16568042 - 16600132
32091
ENSAPLT00000047094
16567557 - 16600060
32504
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000039015
16568042 - 16600060
32019
ENSAPLT00000035270
16568042 - 16600132
32091