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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16595647_16598400_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16595647 - 16598400
Intron Length:
2754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AAACAATTAACT
Flanking Amino Acid:
LGHEKARKRPEHVGALDAQN
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
78.3
0.64
0.8
77
31.7
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
51.9
0.14
1.8
69.29
40.1

Associated Gene:

Gene:
HERC4
Ensembl Gene ID:
ENSAPLG00000002766
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035270
16568042 - 16600132
32091
ENSAPLT00000034780
16568042 - 16600132
32091
ENSAPLT00000002904
16568907 - 16600060
31154
ENSAPLT00000047094
16567557 - 16600060
32504
ENSAPLT00000039015
16568042 - 16600060
32019