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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16635191_16644994_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16635191 - 16644994
Intron Length:
9804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TATTTTTTACCT
Flanking Amino Acid:
IVVGIPAPEVRWYCEGKELE
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.4
34.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.4
0.84
0.7
81.7
29.9
Minor 5ss
42.3
-0.8
3
57.2
47.1
Minor BPS
69.1
0.68
1.5
84.25
36.7

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983