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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1663940_1690466_R

Intron Information:

Intron Rank:
141003
Intron Class:
major
Intron Phase:
Intron Coordinates:
1663940 - 1690466
Intron Length:
26527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCAC
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GCATGATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.9
42.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
29.7
-2.3
3.5
40.5
46
Minor BPS
49.5
0.04
2
66.65
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023185
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044854
1645716 - 1690993
45278