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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16648054_16649556_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16648054 - 16649556
Intron Length:
1503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGGGG
5'SS Class:
major
3'SS Sequence:
TTGCAACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTCACTTAAAC
Flanking Amino Acid:
VQPVSTPVTQAQSPTNYLQG
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
51.5
45.4
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
66.5
0.37
0.9
59.2
36.8
Minor 5ss
27.3
-2.6
3.6
37.8
47
Minor BPS
63.5
0.4
1.6
73.36
36.3

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983