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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16649981_16650951_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16649981 - 16650951
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
CATCTGCTAATT
Flanking Amino Acid:
DSPDFRILQKKPRSMAEPEE
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
86.1
0.81
0.6
85.6
21.8
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
44.1
-0.3
2.2
62.62
41.8

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983