About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16650976_16653041_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16650976 - 16653041
Intron Length:
2066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TGATGCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTCAAGTAATA
Flanking Amino Acid:
QKKPRSMAEPEEICTLVIAE
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
80
0.75
1
78.6
31
Major PPT
76.4
0.59
1
69.5
41.4
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
46.2
-0.2
2.3
67.2
39

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983