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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16654304_16656347_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16654304 - 16656347
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GCTTTGCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTGTTTATCT
Flanking Amino Acid:
EPPPVLAKPKLDQTQLKQLH
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72.5
0.51
1
66
40
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
58.2
0.34
2
79.06
43.7

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983