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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16656936_16659390_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16656936 - 16659390
Intron Length:
2455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGAAT
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
AMGLPKSTPVTSTQGLTKKN
Intron Amino Acid Position:
875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.3
81.8
38.5
Major BPS
49.1
-0
1.5
58
45.4
Major PPT
83
0.74
0.8
81.2
29.3
Minor 5ss
38.8
-1.3
2.8
50.7
39.1
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983