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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16669265_16670207_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16669265 - 16670207
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CAACTTCTAATT
Flanking Amino Acid:
NYTIMAANPQGRVSCSGHLM
Intron Amino Acid Position:
1049

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.2
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80
0.68
0.9
73.8
40.8
Minor 5ss
40.2
-1.1
3.4
55.7
43.1
Minor BPS
47.4
-0.1
1.6
59.52
38

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983