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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16670972_16672509_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16670972 - 16672509
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAACA
5'SS Class:
major
3'SS Sequence:
CACTCTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
GGATGTTTCACT
Flanking Amino Acid:
EGRLCRLDCKVSGLPTPDLT
Intron Amino Acid Position:
1118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
68.9
35.3
Major BPS
67.6
0.44
1.2
75
40
Major PPT
66
0.36
0.9
65.6
35.7
Minor 5ss
39.9
-1.1
2.7
50.5
45.4
Minor BPS
47.7
-0.1
2.2
66.05
44.4

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983