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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16673585_16675442_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16673585 - 16675442
Intron Length:
1858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTAACTCAAAA
Flanking Amino Acid:
ETIPSNRERMSMHQDTTGYV
Intron Amino Acid Position:
1242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.4
0.82
0.7
79.8
32.1
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
49
-0
1.9
63.16
42.3

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983