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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16675577_16677688_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16675577 - 16677688
Intron Length:
2112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TTTGTTGCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTTACATAGTC
Flanking Amino Acid:
VSCTARLDIYAQWHHQIAQP
Intron Amino Acid Position:
1287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.5
39.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.6
0.76
0.9
81.3
36.4
Minor 5ss
39.4
-1.2
3.1
54.6
42.8
Minor BPS
48.4
-0.1
2
65.54
39.7

Associated Gene:

Gene:
MYPN
Ensembl Gene ID:
ENSAPLG00000002627
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002660
16623947 - 16677929
53983