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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16710957_16712705_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16710957 - 16712705
Intron Length:
1749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTGTTCTAATT
Flanking Amino Acid:
WYGVLEDPVTGSAHAVLSSY
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
84.8
0.78
0.8
81.8
34.9
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
52.8
0.17
1.7
72.39
39.2

Associated Gene:

Gene:
PBLD
Ensembl Gene ID:
ENSAPLG00000002362
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002411
16706304 - 16716890
10587