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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16712885_16714147_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16712885 - 16714147
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGAT
5'SS Class:
major
3'SS Sequence:
AATTAAATTCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTCTATAATT
Flanking Amino Acid:
LLVRLSDTYERSVLEKLQVN
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.2
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
56.8
0.15
1.2
51.5
45.3
Minor 5ss
36.8
-1.5
3.1
49.5
46.8
Minor BPS
70.8
0.73
1.5
86.11
33.5

Associated Gene:

Gene:
PBLD
Ensembl Gene ID:
ENSAPLG00000002362
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002411
16706304 - 16716890
10587