Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16714237_16714728_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16714237 - 16714728

Intron Length:

492

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTTACCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

GTTCCTTTAACT

Flanking Amino Acid:

ALEEVGELIKAAVGDMIVQD

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

87.1

Major BPS

77.3

0.68

79.3

29.4

Major PPT

86.2

0.82

0.8

81.4

Minor 5ss

35.1

-1.7

2.7

42.8

Minor BPS

81.2

1.06

1.1

90.47

32.7

Associated Gene:

Gene:

PBLD

Ensembl Gene ID:

ENSAPLG00000002362

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002411

16706304 - 16716890

10587