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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16714759_16714921_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16714759 - 16714921
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAG
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
DLPLYSTYPQALEEVGELIK
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
58.8
0.22
1.6
75
40
Major PPT
86
0.81
0.7
85.6
29.2
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PBLD
Ensembl Gene ID:
ENSAPLG00000002362
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002411
16706304 - 16716890
10587