About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16715032_16715448_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16715032 - 16715448
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
TGTGTCTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATGCTTGACA
Flanking Amino Acid:
ASAAVLFHIQKNTNSVLTFV
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75.1
0.57
0.9
66.7
40.6
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
69
0.59
1.8
79.29
36.9

Associated Gene:

Gene:
PBLD
Ensembl Gene ID:
ENSAPLG00000002362
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002411
16706304 - 16716890
10587