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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16715548_16716829_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16715548 - 16716829
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CTTCCACTAAAT
Flanking Amino Acid:
KLHPADDFTKSSCFGLRWFT
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
75
35.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
78.6
0.64
1
82.9
32.2
Minor 5ss
30.7
-2.2
3.3
40.4
40
Minor BPS
48.8
-0
2.1
73.24
42.7

Associated Gene:

Gene:
PBLD
Ensembl Gene ID:
ENSAPLG00000002362
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002411
16706304 - 16716890
10587