About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16728462_16728786_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16728462 - 16728786
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CAATTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATACGTGACCT
Flanking Amino Acid:
YGTPDGLGGYSRGSGNSGGY
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.7
0.58
1
69.1
41.3
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
46
-0.2
2.4
71.01
45.2

Associated Gene:

Gene:
HNRNPH3
Ensembl Gene ID:
ENSAPLG00000001116
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001187
16723706 - 16728863
5158